mtDNAmanager provides a convenient web interface to analyze, query and store human mtDNA control region sequences (BMC Bioinformatics. 2008;9(1):473). mtDNAmanager is made free and open to all users and there is no login requirement. At the same time, mtDNAmanager offers the option to store and match data with batch mode for registered users.

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The aims of mtDNAmanager are (1) to allow researchers to automatically estimate the most-probable mtDNA haplogroups of their mtDNA control region sequences, (2) to facilitate database screening with improved query tools and (3) to provide researchers with a convenient interface for managing and analysing their own data in batch mode.